PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g10050.1
Common NameLR48_Vigan07g151400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 306aa    MW: 33834.1 Da    PI: 8.0264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g10050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20135184255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Vang01g10050.1 135 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 184
                     59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.95E-34134194No hitNo description
SMARTSM003803.1E-37135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-32135193IPR001471AP2/ERF domain
PROSITE profilePS5103223.103135192IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-23135193IPR016177DNA-binding domain
PfamPF008473.4E-14136184IPR001471AP2/ERF domain
PRINTSPR003672.7E-11136147IPR001471AP2/ERF domain
PRINTSPR003672.7E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAATMDLYNG QPQVQSDPFR GELMEVLEPF MKNSALPSTS TSTSYSYSPS PLSLPPHPNF  60
YSDPSSSYLF QTQTLIGFEQ QPGSVLGLNH LSPFQVSQIQ AQMQAQSQTS LSLNFLGPKP  120
VAMKQVGGPP KPTKLYRGVR QRHWGKWVAE IRLPKNRTRL WLGTFDTAEE AALAYDKAAY  180
RLRGDFARLN FPNLKGSCLG EYKPLQSAVD AKLDAICQSL AEMPKQGKTE KGARASSKKS  240
KAARNPTQDP NPNLVCKAEP ERDGSVDSSP LSDLTFDVSE PQWEDASAYF NLQKFPSYEI  300
DWDSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21134192160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505329.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E43e-89RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0S3RMJ80.0A0A0S3RMJ8_PHAAN; Uncharacterized protein
TrEMBLA0A0L9UY650.0A0A0L9UY65_PHAAN; Uncharacterized protein
STRINGGLYMA14G34590.11e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-62related to AP2 4
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]